Beginning with ISE version 6.1i, the functionality of the MAP "-u" option (Trim Unconnected Signals in Project Navigator) has changed. In ISE version 5.2i, MAP processed all signals as if there are "S" properties attached to them. In ISE 6.1i, MAP only processes signals without drivers or without load as if there are "S" properties attached to them.
This change results in some functional differences from previous releases; for example, an optimization can now occur that was previously disabled. Specifically, circular logic that feeds back on itself without ever driving anything "off-chip" is more likely to be optimized away even when trimming is disabled.